Composite Experiment Resource¶
Resource URL
http://mytorrentserver/rundb/api/mesh/v1/compositeexperiment/
Schema URL
http://mytorrentserver/rundb/api/mesh/v1/compositeexperiment/schema/
Resource Fields¶
field | help text | default | nullable | readonly | blank | unique | type |
---|---|---|---|---|---|---|---|
ftpStatus | Unicode string data. Ex: “Hello World” | false | false | true | false | string | |
storage_options | Unicode string data. Ex: “Hello World” | A | false | false | false | false | string |
displayName | Unicode string data. Ex: “Hello World” | false | false | false | false | string | |
chipType | Unicode string data. Ex: “Hello World” | n/a | false | false | false | false | string |
platform | Unicode string data. Ex: “Hello World” | false | false | true | false | string | |
notes | Unicode string data. Ex: “Hello World” | n/a | true | false | false | false | string |
runMode | Unicode string data. Ex: “Hello World” | false | false | true | false | string | |
results | Many related resources. Can be either a list of URIs or list of individually nested resource data. | n/a | false | false | false | false | related |
resultDate | A date & time as a string. Ex: “2010-11-10T03:07:43” | true | true | false | false | false | datetime |
flows | Integer data. Ex: 2673 | n/a | false | false | false | false | integer |
repResult | A single related resource. Can be either a URI or set of nested resource data. | n/a | true | false | true | false | related |
date | A date & time as a string. Ex: “2010-11-10T03:07:43” | n/a | false | false | false | false | datetime |
expName | Unicode string data. Ex: “Hello World” | n/a | false | false | false | false | string |
pgmName | Unicode string data. Ex: “Hello World” | n/a | false | false | false | false | string |
_host | Host this resource is located on. | n/a | false | true | false | false | string |
star | Boolean data. Ex: True | false | false | false | true | false | boolean |
resource_uri | Unicode string data. Ex: “Hello World” | n/a | false | true | false | false | string |
id | Integer data. Ex: 2673 | false | false | true | true | integer | |
plan | A single related resource. Can be either a URI or set of nested resource data. | n/a | true | false | true | false | related |
Example Response¶
{
"meta": {
"previous": null,
"total_count": 3,
"offset": 0,
"limit": 1,
"next": "/rundb/api/mesh/v1/compositeexperiment/?offset=1&limit=1&format=json"
},
"objects": [
{
"chipInstrumentType": "S5",
"chipType": "540",
"results": [
{
"status": "Completed",
"processedflows": 0,
"libmetrics": {
"i100Q20_reads": 0,
"aveKeyCounts": 88,
"id": 1,
"resource_uri": "",
"q20_mean_alignment_length": 0
},
"representative": false,
"analysis_metrics": {
"ignored": 1042801,
"lib": 139085639,
"total_wells": 164699136,
"pinned": 2329,
"live": 140339912,
"excluded": 16543404,
"bead": 140400602,
"resource_uri": "",
"id": 1,
"empty": 6710000,
"libFinal": 93974105
},
"timeStamp": "2017-03-10T12:37:26.000026+00:00",
"analysismetrics": {
"ignored": 1042801,
"lib": 139085639,
"total_wells": 164699136,
"pinned": 2329,
"live": 140339912,
"excluded": 16543404,
"bead": 140400602,
"resource_uri": "",
"id": 1,
"empty": 6710000,
"libFinal": 93974105
},
"reportLink": "/output/Home/Auto_S5-540_WholeTranscriptomeRNA_91_003/",
"reportStatus": "Nothing",
"quality_metrics": {
"q0_mean_read_length": 149.579903660696,
"q0_reads": 93969124,
"q0_bases": "14055892515",
"q20_reads": 93969124,
"q20_bases": "11916010889",
"q20_mean_read_length": 149,
"id": 1,
"resource_uri": ""
},
"resultsName": "Auto_S5-540_WholeTranscriptomeRNA_91",
"projects": [
{
"resource_uri": "",
"id": 1,
"name": "demo",
"modified": "2017-04-04T01:58:32.000439+00:00"
}
],
"status_display": "Completed",
"qualitymetrics": {
"q0_mean_read_length": 149.579903660696,
"q0_reads": 93969124,
"q0_bases": "14055892515",
"q20_reads": 93969124,
"q20_bases": "11916010889",
"q20_mean_read_length": 149,
"id": 1,
"resource_uri": ""
},
"eas": {
"chipType": "540",
"reference": "",
"isPQ": false,
"references": "",
"barcodeKitName": "IonXpressRNA",
"resource_uri": ""
},
"resource_uri": "/rundb/api/v1/compositeresult/3/",
"id": 3,
"autoExempt": false,
"isShowAllMetrics": true
}
],
"library": "",
"sample": "",
"runMode": "single",
"storage_options": "KI",
"references": "",
"repResult": "/rundb/api/v1/compositeresult/3/",
"id": 91,
"barcodedSamples": {},
"barcodeId": "IonXpressRNA",
"sampleSetName": "",
"platform": "S5",
"applicationCategoryDisplayedName": "RNA Sequencing",
"star": false,
"sampleDisplayedName": "",
"resultDate": "2017-03-10T12:37:26.000026+00:00",
"flows": 500,
"plan": {
"runType": "RNA",
"sampleTubeLabel": null,
"id": 99,
"resource_uri": ""
},
"date": "2017-02-21T12:59:23+00:00",
"ftpStatus": "Complete",
"displayName": "S5-540 WholeTranscriptomeRNA",
"notes": "",
"chipDescription": "540",
"pgmName": "S16",
"keep": true,
"expName": "S5-540_WholeTranscriptomeRNA",
"resource_uri": "/rundb/api/mesh/v1/compositeexperiment/91/"
}
],
"warnings": []
}
Allowed HTTP methods¶
- get
- post
- put
- delete
- patch